benchmarks
• AbsBenchmark.java
• FiltersBenchmark.java
• FloatManipBenchmark.java
• HueBenchmark.java
images
• ATIcon20.ico
screenshots
• analysis-window.png
• main-window.png
source
Algorithms
• AnalyzeSkeleton2.java
• ConvexHull.java
• Filters.java
• Lacunarity2.java
• Lee94.java
• Outline.java
• Particles.java
• PreprocessColor.java
• Tubeness.java
• VesselThickness.java
• Zha84.java
AngioTool
• ATPreferences.java
• Analyzer.java
• AnalyzerParameters.java
• AngioTool.java
• AngioToolGui2.java
• BatchParameters.java
• BatchProcessing.java
• BatchWindow.java
• ColorElement.java
• HelpWindow.java
• ImagingWindow.java
• NumberEntry.java
• RoundedPanel.java
• SimpleFileFilter.java
• SizeColorEntry.java
META-INF
• MANIFEST.MF
Pixels
• ArgbBuffer.java
• BufferConverter.java
• Canvas.java
• ImageFile.java
• NetpbmReader.java
• Planes.java
• Rgb.java
• TiffReader.java
• TiffWriter.java
Utils
• BidirectionalMap.java
• BitReader.java
• BufferPool.tj
• ByteVectorOutputStream.java
• ISliceCompute.java
• ISliceRunner.java
• Misc.java
• RefVector.java
• Vector.tj
Xlsx
• SpreadsheetWriter.java
• XlsxReader.java
• XmlParser.java
deprecated
AnalyzeSkeleton
• AnalyzeSkeleton.java
• Edge.java
• Graph.java
• Point.java
• SkeletonResult.java
• Vertex.java
AngioTool
• ATURLEncoder.java
• AngioToolMain.java
• MemoryMonitor.java
• PolygonPlus.java
• RGBStackSplitter.java
• ReachableTest.java
• Results.java
• SaveToExcel.java
• ThresholdToSelection.java
GUI
• AngioToolAboutBox.java
• AngioToolGUI.java
• ExcelFilter.java
• ImageFileView.java
• ImageFilter.java
• ImagePreview.java
• JHyperlinkLabel.java
• JNumberTextField.java
• MyHTMLEditorKit.java
• MyImageView.java
• RangeSliderPlus.java
• TransparentTextField.java
Lacunarity
• Box.java
• CHull.java
• Lacunarity.java
• TestLacunarity.java
Skeleton
• ForkJoinSkeletonize2.java
• SUM.java
• Skeletonize3D.java
Tiff
• ImageInfo.java
• ImageReader.java
• TiffDecoder.java
• TiffEncoder.java
Utils
• Convex_Hull_Plus.java
• ForkShapeRoiSplines.java
• TestThresholdedPixelArea.java
• Utils.java
doc
AngioToolHelp
doc
• AngioTool.html
images
• AAexit.png
• ATIcon.ico
• ATIcon20 128x128.gif
• ATIcon20 64x64.gif
• ATIcon20.gif
• ATIcon20.ico
• Calibration.PNG
• Close64.png
• Excel64.png
• ExcelFile.png
• ForeBackParticles.PNG
• GUI1.GIF
• GUI1.PNG
• GUI1.TIF
• GUI2.PNG
• HideOverlay.PNG
• ImageExample.png
• OpenImages642.png
• OverlaySettings.PNG
• ResizeImage.PNG
• ResultImage.png
• RunAnalysis64-2.png
• SavingPreferences.PNG
• Thumbs.db
• VesselDiameterIntensity.PNG
• VesselDiameterIntensity.bmp
• about.png
• gifIcon.gif
• help64.png
• jpgIcon.gif
• locked.png
• tiffIcon.gif
• unlocked.png
• AngioTool.html
features
doc-files
• Gaussian.gif
• Hessian.gif
• Scale space representation.gif
• Second_Derivative.gif
• ComputeCurvatures.java
• ForkEigenValuesAtPoint2D.java
• GaussianGenerationCallback.java
• HessianEvalueProcessor.java
• Tubeness.java
• TubenessProcessor.java
icons
• image-delayed.gif
• image-failed.gif
images
• AAexit.png
• ATIcon.ico
• ATIcon20 128x128.gif
• ATIcon20 64x64.gif
• ATIcon20-old.ico
• ATIcon20.gif
• ATIcon20.ico
• Calibration.PNG
• Close64.png
• Excel64.png
• ExcelFile.png
• ForeBackParticles.PNG
• GUI1.GIF
• GUI1.PNG
• GUI1.TIF
• GUI2.PNG
• HideOverlay.PNG
• ImageExample.png
• OpenImages642.png
• OverlaySettings.PNG
• ResizeImage.PNG
• ResultImage.png
• RunAnalysis64-2.png
• SavingPreferences.PNG
• Thumbs.db
• VesselDiameterIntensity.PNG
• VesselDiameterIntensity.bmp
• about.png
• batch64.png
• gifIcon.gif
• help64.png
• jpgIcon.gif
• locked.png
• tiffIcon.gif
• unlocked.png
lib
• AbsoluteLayout.jar
• ij.jar
• markSlider.jar
math3d
• Eigensystem2x2Double.java
• Eigensystem2x2Float.java
• Eigensystem3x3Double.java
• Eigensystem3x3Float.java
• FastMatrixN.java
• FloatMatrixN.java
• JacobiDouble.java
• JacobiFloat.java
• Point3d.java
vesselThickness
• EDT_S1D.java
• ForkStep2.java
• ComputeShapeRoiSplines.java
images
• arrow.png
• batch.png
• boxness-formula.png
• excel.png
• folder.png
• help.png
• icon.gif
• minus.png
• plus.png
• manual.html
• GenerateLee94SimplePoints.java
• buildexe.py
• compile.py
• launcher-win32.c
• license.txt
• readme.md

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